Online Journal of Bioinformatics

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OJB

Online Journal of Bioinformatics©

(Onl J Bioinform©)

Established 1995

ISSN 1443-2250

Listed or Indexed by

National Library of Medicine, USA., Institute of Sciences and technology, Austria.

Scientific Board : Managing Editors:
Guerrini VH., DVM, MVSc, MCompSci, PhD (Bioinformatics, IE),
Alexandra Huger Meister BA, MA (CH),
Rachel Durnsford BA (AU).

Scientific Board:
Ben-Miled Z., BSc, MSc, PhD (Computer Engineering, USA),
Bodèn M., BSc, MSc, PhD (Machine learning, sequence analysis, AU),
Böhringer S., MD, BSc, MSc, PhD (Genetic analysis, DE),
Bourne DWA., BPharm, PhD (Pharmacokinetics, USA),
Ceraj I., DipEng, MSc (Software engineering, MIT, USA),
Chen Y., BS, ME, PhD (Bioinformatics, Software electronic engineering, USA)
Colomb RM., BSc, PhD (Informatics, CA),
Daggard G., BSc, PhD (Genetics, AU),
Dressel U., BSc, Hons, PhD (Genetics, DE),
Dubitzky W., Dipl Ing, MSc, DPhil (Bioinformatics, DE),
Filippich LJ., BSc, BVSc, PhD (Genetics, AU),
Gao S., BS, PhD (Bioinformatics, USA),
Goswami C PhD (Molecular and Genomic Pathology, USA),

Harrison J., BSc, MSc, PhD (Data-mining, USA),
Hughes I., BVSc, PhD, (Genetics AU),
Maetschke SR., MSc, PhD (Software, learning, processing, DE),
Jiang Y., BSc, MSc, Msc, PhD, (Data analysis, oncology, USA),
Lea R., BSc, PhD (Genetic analysis, AU),
Liu L BSc, MS, PhD (Biophysics, Bioinformatics, USA).
Lund EM., DVM, MPH, PhD (Informatics, USA),
Mallick B, M.Tech, PhD (Bioinformatics, USA),
Iquebal MA., BSc, MSc, PhD (Statistics, Bioinformatics, In).
Olsson BE., BSc, MSc, PhD (Bioinformatics, SE),
O'Kane KC., BS PhD (Bioinformatics, USA),
Shadnam MR., BSc, PhD (Nanotechnology, Computer Science, CA)
Shen L., BSc, PhD (Machine Learning, USA),
Singh S PhD., (Medical Education, Orthopaedics, IN)
Song M., PhD (Text Mining, Bioinformatics, Information, USA),
Tang S., BSc, MSc, PhD (Proteomics, Bioinformatics, USA).
Teasdale RG., BSc, PhD (Computational Cell Biology, AU),
Thongboonkerd V, MD, FRCPT (Proteomics, USA).
Wang H., BEng, MSc, PhD (Gene expression, UK)
Wu D BS, PhD (Bioinformatics and drug design, USA),
Yao J MSc, PhD (Plant genomics, USA ),
Zou M., MSc, PhD (Cancer Biology and Human Genetics, USA).

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2024 (1)

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ABSTRACT: In silico prediction for Ha-NMR chemical shifts in mouse epidermis growth factors.

Díaz HG, De Armas RR, Uriarte E., 25 (1): 19-25, 2024.

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ABSTRACT: Non-coding in silico cis-regulatory elements in Mesorhizobium loti

Khan F, Agrawal S, Mishra BN., Onl J Bioinform., 25 (1) : 1-18, 2024.

2023 (3)

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ABSTRACT: Exploratory confirmatory factor analysis water quality fingerprinting.

Boyacioglu H, Boyacioglu H., Onl J Bioinform., 24 (3) : 188-197, 2023.

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ABSTRACT: Rareness of consensus DNA by sequence encoding.

Meena K,Menaka K, Sundar TV, Subramanian KR., Onl J Bioinform., 24 (3) 182-187, 2023.

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ABSTRACT: Binding fork head protein transcription to DNA by base cooperation.

Mach V., Onl J Bioinform., 24 (3) 172-181, 2023.

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ABSTRACT: In Silico docking human glut5 protein intestinal transport.

Padmavathi GV, Saralakumari D, Nataraj Sekhar P., Onl J Bioinform., 24 (3):156-171, 2023.

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ABSTRACT: In silico Identification of Streptococcus pneumoniae by Microarray.

Wadhwa G, Setiya K, Imran Hazra, Madhan MT., Onl J Bioinform., 24 (3):145-155, 2023.

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ABSTRACT: Neural network to detect rare events in DNA repeat sequences.

Meena K,Menaka K, Sundar TV, Subramanian KR., Onl J Bioinform., 24 (3):135-144, 2023.

2023 (2)

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ABSTRACT: Genomic changes through generational sequencing.

Loukatou S, Chatzinikolaou P, Vlachakis D, Kossida S., Onl J Bioinform., 24 (2):128-134, 2023.

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ABSTRACT: In silico drug binding of endocarditis pathogens.

Priyadarshini V, Pradhan D, Munikumar M, Swargam S, Umamaheswari A, Rajasekhar D., Onl J Bioinform., 24 (2):110-127, 2023.

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ABSTRACT: Mitochondrial dysfunction gene hubs in Parkinson’s disease.

Balakrishnan IK, Rangasamy S, Natarajan J., Onl J Bioinform., 24 (2): 102-109, 2023

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ABSTRACT: Cognition enhanced artificial neural network for detection of rare DNA.

Meena K,Menaka K, Sundar TV, Subramanian KR., Onl J Bioinform., 24 (2):92-101, 2023.

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ABSTRACT: In silico Streptococcus pneumoniae drug target by microarrays.

Wadhwa G, Setiya K, Hazra I, Madhan MT., Onl J Bioinform., 24 (2):74-91, 2023.

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ABSTRACT: In silico Staphylococcus aureus epitopes for vaccine.

Bajetha G, Anil Rai S., Onl J Bioinform, 24 (2):65-73, 2023.

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ABSTRACT: Binding energy and docking with PI3K inhibitors.

Shrivastava A, Durga Prasad K, Giri A., Onl J Bioinform., 24 (2):57-64, 2023

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ABSTRACT: In Silico diaryl-sulfonyl-urea chalcone hybrid anti-inflammatory activity.

Kumar B, Kaladhar B., Onl J Bioinform., 24 (2):45-56, 2023.

2023 (1)

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ABSTRACT: Homology 3D protein model from GATA4 single nucleotide polymorphisms in congenital heart disease.

Dinesh SM, Karunakar P, Ramachandra NB., Onl J Bioinform., 24 (1):33-44, 2023.

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ABSTRACT: In silico phylogenetics of functional proteins in entomo-pathogenic bacteria.

Razia M, Karthik RR, Padmanaban K, Chellapandi P, Sivaramakrishnan S., Onl J Bioinform., 24 (1):24-32, 2023

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ABSTRACT: In silico isoform inhibition for class I pan P13K toxicity.

Shrivastava A, Prasad KD, Giri A., , Onl J Bioinform., 24 (1): 14-23, 2023.

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ABSTRACT: Effect of 3D structure and curcumin analogs on papilloma virus.

Singh AK, Misra K., Onl J Bioinform., 24 (1):6-13, 2023

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ABSTRACT: Functional genomics of Carboxydothermus hydrogenoformans CO metabolism and hydrogen production.

Rajadurai CP, Kumar GR., Onl J Bioinform., 24 (1):1-5, 2023

2022 (3)

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ABSTRACT: In silico binding dipeptidyl peptidase target protein for diabetes mellitus 2.

Sharmah R, Sinha S, Johari S., Onl J Bioinform., 23 (3):287-297, 2022

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ABSTRACT: In silico crystal structure of UDP-glucose 4-epimerases from Catharanthus roseus.

Ramachandran M, Arunkumar DE., Onl J Bioinform., 23 (3):276-286, 2022.

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ABSTRACT: In silico inhibition of tyrosine phosphatase 1B natural ligands.

Chawla S, Gupta D, Tiwari A., Onl J Bioinform., 23 (3):268-275, 2022.

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ABSTRACT: Identification and sequence analysis of bovine toll like receptor gene.

Shah SM, Kumar R, Brah GS., Onl J Bioinform., 23 (3):258-267, 2022.

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ABSTRACT: In silico interactions of curcumin with human papilloma virus 16 E6 protein cancer.

SinghAK, Misra K., Onl J Bioinform., 23 (3):251-257, 2022.

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ABSTRACT: Role of introns in genomic DNA and precursor mRNA.
Amouda V, Visalakshi D,   Ahmed T,    Kuppuswami S., Onl J Bioinform., 23 (3):234-250, 2022.

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ABSTRACT: In silico structural and functional characterization of adenosine receptors.
Bandaru S, Sikka S, Jyothy A, Prasad HM,Yadav M, Nayarisseri AS, Onl J Bioinform., 23 (3):218-233, 2022

2022 (2)

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ABSTRACT: Machine learning protein thermostability.

Ebrahimie E, Ebrahimi M., Onl J Bioinform., 23 (2):218-247, 2022.

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ABSTRACT: Protein secondary structure prediction by consensus.

Shanmugam G, Antony T, Natarajan J., Onl J Bioinform., 23 (2):211-217, 2022.

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ABSTRACT: Gognitive neural network to detect rare events in DNA.

Meena K,Menaka K, Sundar TV, Subramanian KR., Onl J Bioinform., 23 (2):203-210, 2022.

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ABSTRACT: XML model for relational integrity constraints and complex types.

Kasri LA, Chenfour N., Onl J Bioinform., 23 (2):190-202, 2022.

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ABSTRACT: Fuzzy neural network classification for protein structure superfamily.

Angadi UB, Venkatesulu M., Onl J Bioinform, 23 (2):179-189, 2022.

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ABSTRACT: Characterization of mouse insulin by gene network modules.

Arif Z, Verma CK., Onl J Bioinform., 23 (2):162-178, 2022.

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ABSTRACT:In silico anoxia tolerance gene sequence residues.

Sahu TK, Rao AR, Alka BG, Behera BK, Mohapatra T., Onl J Bioinfo., 23 (2):146-161, 2022.

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ABSTRACT:Differential gene expression genome microarray of brain tumor tissue gene biomarkers for In Silico therapy.

Ravichandran S, Jeyakumar N., Onl J Bioinform., 23 (2):141-145, 2022.

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ABSTRACT:Micro-RNA’s expressed in brain and genes associated with amyotrophic lateral sclerosis.

Shinde SP, Arora N, Bhadra U., Onl J Bioinform., 23 (2):112-140, 2022.

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ABSTRACT:Structure-activity model for drug induced acute kidney toxicity,

Satalkar V, Lokhande KB, Swamy KV., Onl J Bioinform., 23 (2):104-111, 2022

2022 (1)

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ABSTRACT: In silico drug inhibition of elastase for treatment of emphysema.

Rajashekaran R, Muralidharan C, Ravichandran S, Vetrivel U., Onl J Bioinform., 23 (1):93-103, 2022

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ABSTRACT: In silico autosomal recessive cone rod dystrophy genes.

Khattak NA, Elahi S, Mir A, Latif N, Ismail M., Onl J Bioinform., 23 (1):85-92, 2022.

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ABSTRACT: Non-synonymous GATA4 derived protein single nucleotide polymorphisms and congenital heart disease.

Dinesh SM, Karunakar P, Ramachandra NB., Onl J Bioinform., 23 (1):69-84, 2022.

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ABSTRACT: Java-program to predict protein subcellular location by physiochemical properties.

Brindha SK, Sailo S, Kumar NS., Onl J Bioinform., 23 (1):43-55, 2022.

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ABSTRACT: In silico inhibition of protein tyrosine phosphatase 1B by ligand docking.

Chawla S, Gupta D, Tiwari A., Onl J Bioinform., 23 (1):37-42, 2022.

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ABSTRACT: In silico binding curcumin with papilloma virus 16 E6 protein.

Singh AK, Misra K., Onl J Bioinform., 23 (1):30-36, 2022

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ABSTRACT: In silico cloning calmodulin genes in cereals and millets.

Nath M, Goel A, Kumar A., I Onl J Bioinform., 23 (1):19-29, 2022.

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ABSTRACT: Interactions of microRNAs with type 2 diabetes mellitus genes.

Pal-Bhadra M, Arora N, Santosh PS, Ray P, Banerjee AK, Murty USN, Bhadra U., Onl J Bioinform., 23 (1):1-18, 2022

2021 (3)

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ABSTRACT: Homology model protein GATA4 nucleotide polymorphisms in congenital heart disease.

Dinesh SM, Karunakar P, Ramachandra NB., Onl J Bioinform., 22 (3): 301-314, 2021.

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ABSTRACT: In silico T-cell epitope protective antigen for Bacillus anthracis.

Nayarisseri SA, Ahmed SS, Yadav DM, Sahu J, Gupta P, Chourasia R,Mittal RD., Onl J Bioinform., 22 (3): 286-300, 2021.

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ABSTRACT: In silico drug targets in Streptococcus pneumoniae by microarray.

Wadhwa G, Setiya K, Hazra I, Madhan MT., Onl J Bioinform., 22 (3): 278-285, 2021.

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ABSTRACT: In Silico elastase anti-trypsin model for inhibition of emphysema.

Rajashekaran R, Muralidharan C, Ravichandran S, Vetrivel U., Onl J Bioinform., 22 (3): 269-277, 2021.

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ABSTRACT: Homology Modeling UDP-Glucose 4-epimerase in Catharanthus roseus.

Ramachandran M, Arunkumar DE., Onl J Bioinform., 22 (3): 258-268, 2021.

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ABSTRACT: MicroRNAs in brain and genes associated with amyotrophic lateral sclerosis.

Shinde SP, Arora N, Bhadra U., Onl J Bioinform., 22 (3): 230-257, 2021

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ABSTRACT:Introns.

Amouda V, Visalakshi D, Ahmed T, Kuppuswami S., Onl J Bioinform., 22 (3): 209-229, 2021.

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ABSTRACT:Near-Native protein folding structure simulations.

Fidanova S., Onl J Bioinform., 22 (3): 199-208, 2021.

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ABSTRACT:In silico phylogenetic, poly and non-structural protein analysis of Japanese encephalitis viruses.

Mishra M, Trivedi AC, Khanna VK, Pant AB, Srivastava P., Onl J Bioinform., 22 (3): 189-198, 2021.

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ABSTRACT: In-silico polymorphism and structure of human retinal-aldehyde-binding protein 1.

Ilyas M, Masood K., Onl J Bioinform., 22 (3): 175-188, 2021.

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ABSTRACT: Putative promoter motifs in hepatitis C, dengue, Japanese encephalitis and yellow fever virus.

Singh M, Barman AS., Onl J Bioinform., 22 (3): 165-174, 2021.

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ABSTRACT: Homology docking SHV β-lactamases for drug resistance.

Baig MH, Shakil S, Khan AU., Onl J Bioinform., 22 (3): 153-164, 2021.

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2021 (2)

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ABSTRACT: Phylogenetic assignment of proteins in entomopathogenic bacteria (Photorhabdus luminescens subsp. laumondii TT01).

Razia M, Raja KR, Padmanaban K, Chellapandi P, Sivaramakrishnan S., Onl J Bioinform., 22 (2): 136-152, 2021

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ABSTRACT: In silico docking inhibition of p-glycoprotein by flavonoids.

Rayalu DJ, Rao DM, Seshapani P., Onl J Bioinform., 22 (2): 121-135, 2021

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ABSTRACT: In silico docking analysis of betaine aldehyde dehydrogenase2 with pesticides in scented Basmati Rice.

Singh G., Onl J Bioinform., 22 (2): 111-120, 2021

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ABSTRACT: Protein surface extracting algorithms for active site residues.

Singh K, Pal MK, Lahiri T, Samal ASK., Onl J Bioinform., 22 (2): 103-110, 2021

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ABSTRACT: Structure based virtual screening for DNA methyl transferase-1 inhibitors.

Saddala MS, Jyothi P, Rani AU., Onl J Bioinform., 22 (2): 96-102, 2021.

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ABSTRACT: Web tool for classification and prediction of ribonucleases.

Bhasker P, Pardasani KR., Onl J Bioinform., 22 (2): 86-95, 2021

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ABSTRACT: Database on structural and functional Information for biotoxins.

Gowrishankar R, SundaraBaalaji N., Onl J Bioinform., 22 (2): 70-85, 2021.

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ABSTRACT: Molecular docking curcumin analogs with phospholipase A2.

Dileep KV, George T, Sadasivan C., Onl J Bioinform., 22 (2): 62-69, 2021.

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ABSTRACT: Characterization and Sequencing of MT-COX1 gene from chickens.

Albooshokeh SN, Tahmoorespur M, Nassiry MR., Onl J Bioinform, 22 (2): ): 52-61, 2021.

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ABSTRACT: In silico drug targets for severe acute respiratory syndrome (SARS) coronavirus and implications for COVID 19.

KumarV, Goswami S, Namdeo R, Jain R., Onl J Bioinform., 22 (2): 45-51, 2021.

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ABSTRACT: In silico ADME and toxicity of Flavopiridol CDC2 analogue inhibitor.

Jabin D, Vidyarthi AS, Shankaracharya S., Onl J Bioinform., 22 (2): 39-44, 2021.

2021 (1)

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ABSTRACT: Sequence pathway analysis of Mycobacterium Tuberculosis and Leprae

Pillai L, Chouhan U., Onl J Bioinform., 22 (1): 32-38, 2021

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ABSTRACT: In silico 1,8 cineole model in eucalyptus oil docking to 2019-N-CoV spike S1 protein and drug pharmacodynamics.

Sharma AD, Kaur I., Onl J Bioinform, 22 (1): 24-31, 2021.

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ABSTRACT: In silico curcumin analog binding with human papilloma virus 16 E6 protein.

Kumar Singh A, Misra K., Onl J Bioinform., 22 (1): 18-23, 2021.

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ABSTRACT: In silico PCR for single nucleotide polymorphisms associated with caprine meat quality.

Maitra A, Sharma R., Onl J Bioinform., 22 (1): 12-17, 2021.

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ABSTRACT: In silico 3D model of copper and zinc superoxide dismutase from Deinococcus radiodurans.

Ashokan KV, Pillai MM., Onl J Bioinform., 22 (1):1-11, 2021.

2020 (3)

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ABSTRACT: Dopamine receptor D1A phylogenetic relationship amongst different organisms.

Shukla P., Onl J Bioinform, 21 (3):288-303, 2020

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ABSTRACT: A model for identifying drug like molecules.

Adhikari K, Lahiri T, Mishra H, Singh K, Kumar CAN., Onl J Bioinform., 21 (3):280-287, 2020.

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ABSTRACT: In silico binding 3D model of ascorbic acid transport protein with tocopherol and curcumin.

Upadhyaya J, Rajesh Kr, Misra K, Krishna M., Onl J Bioinform 21 (3):274-279, 2020.

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ABSTRACT: In Silico 3D Polymerase PB2 protein target docking for inﬂuenza A virus.

Kunurri S, Balaji SRN, Gupta A, Lalam NM, Gupta KK., Onl J Bioinform., 21 (3):271-273, 2020.

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ABSTRACT: β-lactam 3D docking on penicillin binding and serine-threonine kinase proteins (PASTA) of Staphylococcus aureus.

Kaura T, Jamwalb S, Khullarb N, Baric SS., Onl J Bioinform., 21 (3): 23: 262-272, 2020.

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ABSTRACT: Pharmacokinetics of cyanidin and anti-influenza phytonutrients in an elderberry extract determined by LC-MS and DART TOF-MS.

Roschek B Jr, Alberte RS., Onl J Bioinform., 23: 246-261, 2020.

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ABSTRACT: Pharmacokinetics and hepatotoxicity of flutamide liposomes in Wistar rats after single intravenous administration.

Umrethia ML, Ghosh PK, Majithiya RJ, Murthy RSR., Onl J Bioinform., 21(3): 236-245, 2020.

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ABSTRACT: In Silico prediction of putative epitopes in structural polyprotein of Chikungunya virus.

Asnet Mary J, Kavitha S, Victoria V, Paramasivan R, Shenbagarathai R, Selvanayagam P, Madhanmohan T., Onl J Bioinform., 21(3): 225-235, 2020.

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ABSTRACT: In silico homology model of polyphenolic substrates for Laccase from Pleurotus ostreatus.

Ravindra Babu P, Siva Rajesh S, Jayasree G, Donthi S, Thejasree SS, Lakshmana Rao SS, Siva Sai KSR, Onl J Bioinform., 21(3): 209-224, 2020.

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ABSTRACT: Extraction of protein surface information from its aggregate.

Mishra H, Lahiri T., Onl J Bioinform., 21(3): 190-208, 2020.

2020 (2)

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ABSTRACT: Glycan binding protein genes in Streptococcus mutans as potential pathogens aligned to lectin database.

Aflitos SA, Cavada BS, Fernandez LG, Moreno FB, Nogueira LL, Simões RC., Onl J Bioinform., 21(2): 183-189, 2020

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ABSTRACT: In silico multi-epitope severe fever thrombocytopenia syndrome vaccine targets virus membrane glycoprotein.

Bandarupalli R, Kasaraneni B, Madala C, Paladugu L, Devi Nelluri KD., Onl J Bioinform., 21(2): 168-182, 2020.

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ABSTRACT: In silico ligand docking human AlkB proteins hABH6 and 7 to inhibit cancer.

Karumuri S, Vidyarthi AS, Shankaracharya A., Onl J Bioinform., 21(2): 154-167, 2020.

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ABSTRACT: Effect of stressors on Candida albicans genes determined by next generational sequencing.

Mani P, Gandham BS, Sasmal K, Achutharao HP, Talukder A. , Onl J Bioinform., 21 (2): 147-153, 2020.

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ABSTRACT: Screening for taxanes with β tubulin inhibition and multidrug resistance.

Selvaraj NV, Kannan KP, Kumar GR., Onl J Bioinformatics., 21(2): 132-146, 2020.

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ABSTRACT: Bioinformatic tools to detect microbial resistance to sanitizers and antibiotics due to coronavirus.

Dubey A., Onl J Bioinform., 21(2): 128-131, 2020.

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ABSTRACT: In silico molecular docking drug target of eucalyptol (1,8 cineole) for SARS-CoV-2 coronavirus Mpro/3CLpro protein.

Sharma AD, Kaur I., Onl J Bioinform., 21(2): 121-127, 2020.

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ABSTRACT: Computational function annotation of hypothetical proteins in Listeria monocytogenes EGD-e.

Naghera M, George JJ, Kholia T., Onl J Bioinform., 21(2): 114-120, 2020.

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ABSTRACT: In silico prediction of potential T cell antigenic determinants from proteome of H1N2 swine influenza A virus.

Verma SK, Singh Yadav SP, Kumar A., Onl J Bioinform., 21(2): 106-113, 2020.

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ABSTRACT: Support vector machine for classification of plants and animal miRNA.

Pardasani KR, Pant B, Pant K., Onl J Bioinform., 21(2): 97-105, 2020.

2020 (1)

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ABSTRACT:In Silico synthesis of diarylsulfonylurea chalcone hybrids and anti-inflammatory activity.

Kumar Bugata B, Kaladhar DSVGK., Onl J Bioinform., 21(1): 86-96, 2020.

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ABSTRACT:Calculating binding free energies and docking scores with PI3K inhibitors.

Shrivastava A, Durga Prasad K, Giri A., Onl J Bioinjform., 21(1): 78-85, 2020.

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ABSTRACT:In Silico 3D Model of E. coli NAD+-dependent DNA ligase drug targets.

Akhoon BA, Dhaliwal G, Gupta SK, Srivastava M., Onl J Bioinform., 21(1): 69-77, 2020

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ABSTRACT:Dof gene transcription factors for development of rice seed Oryza sativa ssp.

Gaur VS, Singh US, Singh V, Kumar A., Onl J Bioinform., 21(1): 38-68, 2020

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ABSTRACT:Identification of potential drug-targets in human pathogen Clostridium perfringens SM101.

Chabra G, Sharma P, Anant A, Deshmukh S, Kaushik H, Gopal K, Srivastava N, Sharma N, Garg LC., Onl J Bioinform., Volume 21(1): 21-37, 2020.

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ABSTRACT: Homology model drug design for 18kDa antigen in Mycobacterium leprae.

Rayalu JD, Latha SSL, Ramesh K, Naidu NV, Bhaskhar M., Onl J Bioinform., 21(1): 1-20, 2020.

2019 (3)

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ABSTRACT: Computational Prediction of 3D Structure for the Matrix Protein2 (BM2) of Influenza B Virus.

Tiwari A, Trivedi AC, Sarangi AN, Srivastava P., Onl J Bioinform., 20(3): 272-290, 2019.

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ABSTRACT: Sequence, structural and phylogenetic analysis of heat shock proteins (HSP) 60, 70 and 90.

Desai NS., Agarwal A, Uplap S., Onl J Bioinform., 20(3): 245-271, 2019.

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ABSTRACT: Alternate synthesis of Finasteride and derivatives to inhibit 5α-reductase.

Sanganabhatla D, Sunder RS., 20(3): 233-244, 2019.

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ABSTRACT: Prediction of epitopes for vaccine against Salmonella typhimurium.

Ranga V, Shakyawar SK, Bora U, Kumar D., Onl J Bioinform., 20(3): 221-232, 2019.

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ABSTRACT: In silico inhibition of acetylcholine esterase in Alzheimer’s.

Boppana S, Pagadala NS, Rangappa KS., Onl J Bioinform., 20(3): 210-220, 2019.

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ABSTRACT: In silico identification and characterization of novel DOF genes from Sorghum by comparative genomics,

Kushwaha H, Singh VK, Rastogi S, Yadav D, Onl J Bioinform., 20(3):194-209, 2019.

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ABSTRACT: An In silico model for docking Finasteride to 5α-reductase (homo sapiens).

Sanganabhatla D, Shyam Sunder R., Onl J Bioinform., 20(3):182-193, 2019.

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ABSTRACT: Homology 3-D model for docking Hemagglutinin protein of influenza A (H1N1) virus binding ligand inhibitors.

Pallavi Y, Baphilinia MJ, Eashwar A, Atanu B., Onl J Bioinform., 20(3):174-181, 2019

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ABSTRACT: In silico model predictor for human amelogenin synthesis in tooth enamel.

Kesharwani TK, Mahajan V, Misra K., Onl J Bioinform., 20(3):166-173, 2019.

2019 (2)

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ABSTRACT: A single nucleotide polymorphism in Ginger (Zingiber officinale Rosc) found by analysis of expressed sequence tags.

Chandrasekar A, Riju A, Sithara K, Anoop S, Eapen SJ., Onl J Bioinform., 20(2):166-173, 2019

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ABSTRACT: A Fuzzy petri net model for Lac Operon regulation in E coli.

Hamed RI, Ahson SI, Parveen R., Onl J Bioinform., 20(2):144-165, 2019.

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ABSTRACT: In silico drug binding glycerol phosphate dehydrogenase-1 for treatment of Brugada syndrome.

Raja S, Anbazhagan RR., Onl J Bioinform., 20(2):135-143, 2019.

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ABSTRACT: Identification of potential drug-targets in human pathogen Clostridium perfringens.

Chabra C, Sharma P, Anant A, Deshmukh S, Kaushik H, Gopal K, Srivastava N, Sharma N, Garg LC., Onl J Bioinform., 20(2):124-134, 2019

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ABSTRACT: A molecular docking mechanism model for benzimidazole to inactivate glutathione reductase in chickpea

Singh G, Kaur M., Onl J Bioinform., 20(2):112-123, 2019.

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ABSTRACT: Computational Prediction of 3D Structure for the Matrix Protein2 (BM2) of Influenza B Virus.

Tiwari A, Trivedi AC, Sarangi AN, Srivastava P., Onl J Bioinform., 20(2):89-111, 2019.

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ABSTRACT: A rough set based dimensionality reduction classifier using statistical factors as protein attributes.

Pant K, Adlakha N, Mittal A, Pardasani KR., Onl J Bioinform., 20(2):81-88, 2019.

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ABSTRACT:Schuirmann’s versus nonparametric two 1-sided tests for non-normal data in pharmacokinetic drug-drug interactions.

Zhou J, He Y, Yuan Y., Onl J Bioinform., 20(2):76-80, 2019.

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ABSTRACT:CBTDB - Database on Structural and Functional Information of Biotoxins.

Gowriishankar R, Baalaji SN., Onl J Bioinform., 20(2):62-75, 2019

2019 (1)

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ABSTRACT:Computer aided subunit vaccine design against pathogenic Leptospira serovars.

Umamaheswari A, Pradhan D, Hemanthkumar M., Onl J Bioinform., 20(1):47-61, 2019.

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ABSTRACT:A fast Fourier approach to model genomic elements.

Yaragatti M., Onl J Bioinform., 20(1):43-46, 2019.

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ABSTRACT:Molecular docking of curcumin analogs with phospholipase A2.

Dileep KV, Tintu G, Sadasivan C., Onl J Bioinform., 20(1):32-42, 2019.

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ABSTRACT:Prediction patterns for initiation region of α-helix of proteins.

Joseph B, Nair VM., Onl J Bioinform., 20(1):23-31, 2019.

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ABSTRACT:Homology based modeling of glial fibrillary acidic protein,

Biswas S, Roy S, Mandal RS,Das HR., Onl J Bioinform., 20(1):9-22, 2019.

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ABSTRACT:Insights into the mechanism of coccidiosis from Isospora Suis.

Picasi E, Kaisaridi P, Diakou K, Kaliafentakis K, Papageorgiou L, Megalooikonomou V, Vlachakis D., Onl J Bioinform., 20(1):1-8, 2019.

2018 (3)

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ABSTRACT:In-Silico structure prediction of p27SJ, a novel protein in St John’s Wort that suppresses expression of HIV-1 genome.

Gupta A, Gupta V, Pa SK, Narayan J, Potukuchi SM, Verma V., Onl J Bioinform., 19(3):281-288, 2018.

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ABSTRACT:Gene expression analysis of microarrays for tuberculosis drugs.

Rastogi A, Gangwar P, Mohan A, Kumar S, Malakar A., 19(3):271-280, 2018.

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ABSTRACT:Extraction of protein surface information from its aggregate.

Mishra H, Lahiri T., Onl J Bioinform., 19(3):258-270, 2018.

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ABSTRACT:In Silico drug targets for severe acute respiratory syndrome (SARS) and coronavirus.

Kumar V, Goswami S, Namdeo R, Jain R., Onl J Bioinform., 19(3):247-257, 2018.

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ABSTRACT:In silico conservation homology in xylanases from Thermomyces lanuginosus.

Shrivastava S, Shukla P, Poddar R, , Onl J Bioinform, 19 (3): 240-246, 2018

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ABSTRACT:Subtractive genomics for membrane drug targets for antibiotic resistant Chlamydia trachomatis A/HAR-13.

Vijayakumari SM, Shivkumar M, Biplab B, Keshava M, Jhinuk C., Onl J Bioinform., 19(3):234-239, 2018

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ABSTRACT:DiRiboPred: A Web Tool For Classification and Prediction of Ribonucleases.

Pant B, Pardasani KR., Onl J Bioinform., 19(3):222-233, 2018.

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ABSTRACT:Bioinformatics: Evolution to Revolution.

Mazumdar D, Raha S., Onl J Bioinform., 19(3):214-221, 2018.

2018 (2)

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ABSTRACT:A theoretical approach to test possible interaction between DNA and in silico platelet P2Y1 receptor.

Mukherjee A., Onl J Bioinform., 19(2):208-213, 2018.

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ABSTRACT:Pattern prediction for initiation region of alpha-Helix protein.

Joseph B, Nair VM., Onl J Bioinform., 19(2):200-207, 2018.

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ABSTRACT:In Silico prediction of putative epitopes in structural polyprotein of Chikungunya virus.

Asnet Mary J, Kavitha S, Victoria V, Paramasivan R, Shenbagarathai R, Selvanayagam P, Madhanmohan T., Onl J Bioinform., 19(2):189-199, 2018.

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ABSTRACT:In silico prediction of antigenic epitope of coat protein from soybean dwarf virus.

Gomase VS, Chikhale NJ., Onl J Bioinform., 19(2):181-188, 2018.

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ABSTRACT:In silico docking of quercetin-3-O-β-D-glucoside from Azadirachta indica with NS2B-NS3 protease in Dengue virus.

Dwivedi VD, Tripathi IP, Tripathi RC, Singh R, Yadava U, Mishra SK., Onl J Bioinform., 19 (2):175-180, 2018.

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ABSTRACT:Determining antioxidant stability in mixtures of heated oils by neural networks.

Rubalya Valantina S, Neelamegham P., Onl J Bioinform., 19 (2):162-174, 2018.

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ABSTRACT:In silico docking human AlkB proteins hABH6 and 7 with inhibitors.

Karumuri S, Vidyarthi AS, Shankaracharya A., Onl J Bioinform., 19 (2):146-161, 2018.

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ABSTRACT:Fuzzy Neural Network for Classification of Protein Domains into SCOP Superfamily.

Angadi UB, Venkatesulu M., Onl J Bioinform., 19 (2):135-145, 2018.

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ABSTRACT: Virtual Laboratories and Online Instruction to Enhance Physics Education.

Ricky J. Sethi, Onl J Bioinform., 19 (2):124-134, 2018.

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ABSTRACT: GenomeBrowser: sequence analysis and annotation tool.

Fursov M, Novikova O, Shutov O, Blinov A., Onl J Bioinform., 19 (2):120-123, 2018

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ABSTRACT: In silico interaction between DNA and platelet p2y1 receptor.

Mukherjee A., Onl J Bioinform., 19 (2):114-119, 2018.

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ABSTRACT: Cognition enhanced artificial neural network for detection of rare events in DNA repeat sequences.

Meena, K, Menaka, K, Sundar, TV, Subramanian KR., Online J Bioinform, 19(2):107-113, 2018.

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ABSTRACT: Synonymous codon usage analysis of 32 mycobacteriophage genomes.

Hassan S, Mahalingam V, Kumar V., Onl J Bioinform., 19 (2):96-106, 2018.

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ABSTRACT: In silico structural and functional analysis of calpain-like protease of L. donovani, L. infantum and L. major.

Sahoo GC, Dikhit MR, Kumar M, Das P, Onl J Bioinform, 19 (2): 67-95, 2018

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ABSTRACT: Potential drug target sites of HIV identified by bioinformatics and intelligent machine learning techniques.

Dubey A., Onl J Bioinform 19 (2):56-66, 2018.

2018 (1)

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ABSTRACT: Molecular Characterization and Phylogenetic analysis of BZIP protein in plants.

Dhivya S, Karthikeyan PP, Arul L, Balasubramanian P, Abhishek P., Onl J Bioinform., 19 (1):47-55, 2018

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ABSTRACT: In silico prediction of antigenic epitope of coat protein from soybean dwarf virus.

Gomase VS, Chikhale NJ., Onl J Bioinform., 19 (1):41-46, 2018.

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ABSTRACT: State of the art sensor-based wearables and nanorobotics for Life Sciences.

Bakopoulos E, Papageorgiou L, Megalooikonomou V, Vlachakis D., Onl J Bioinform., 19 (1):35-40, 2018

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ABSTRACT: Characterization and statistical analysis of gene expression on human X–chromosome, Xq22.1.

Niranjan V, Tamilzharasi V, Rahiman BA , Mohomood R, Kangesan P., Onl J Bioinform., 19 (1):25–34, 2018.

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ABSTRACT: GC dispersion in non-coding RNAs from E. coli K12 genome.
Sridhar J, Rafi ZA., Onl J Bioinform 19 (1):20–24, 2018.

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ABSTRACT: Fomecin –A antiviral for NS3-4A of Hepatitis C virus.
Shanmugam R, Mani K, Vijay Kumar B., Onl J Bioinform., 19 (1):13-19, 2018.

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ABSTRACT: Detecting domain boundaries in proteins by plotting of energy of non-bonded interactions as function of In silico chain

truncation in native structural format.
Guptasarma P., Onl J Bioinform, 19 (1):1-12, 2018.

2017 (3)

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ABSTRACT: Subtractive genomics for membrane drug targets for antibiotic resistant Chlamydia trachomatis A/HAR-13,
Vijayakumari SM, Shivkumar M, Biplab B, Keshava M, Jhinuk C., Onl J bioinform., 18(3):119-125, 2017.

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ABSTRACT: In silico T-Cell Bacillus anthracis epitope protective antigen - lethal factors.
Nayarisseri AS, Ahmed SS, Yadav MD, Sahu J, Gupta P, Chourasia R, Mittal DR., Onl J Bioinform, 18(3):108-118, 2017.

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ABSTRACT: Calculating binding free energies and docking scores with PI3K inhibitors.
Shrivastava A, Durga Prasad K, Giri A., Onl J Bioinform., 18(3):101-107, 2017.

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ABSTRACT: In silico drug design for methylene-tetrahydrofolate reductase.
Ram G., Onl J Bioinform., 18 (3): 86-100, 2017.

2017 (2)

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ABSTRACT: In silico prediction for Staphylococcus aureus vaccine epitopes.
Garima Bajetha S, Anil Rai., Onl J Bioinform., 18(2):68-77, 2017.

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ABSTRACT: In silico epitope for malaria protein subunit vaccines.
Premnath D, Indiraleka M., Onl J Bioinform., 18(2):58-67, 2017.

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ABSTRACT: Machine learning models for evaluation of domain based classification of AIDS HIV-1 groups.
Dubey A., Onl J Bioinform 18(2):53-57, 2017.

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ABSTRACT: Docking alpha glucosidase (Homo sapiens) with Pterocarpus santalinus linn (red sandalwood) for management of diabetes mellitus.
Challa CS1., Bulle S, Reddy VD., Nayakanti D, Nallanchakravarthula V., Onl J Bioinform., 18(2):47-52, 2017.

2017 (1)

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ABSTRACT: Model docking human indoleamine 2,3 dioxygenase for prevention of cataract.
Vrukonda Nagalaxmi, Turlapati NagaRaju., Onl J Bioinform., 18(1):39-46, 2017.

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ABSTRACT: In silico docking hydrazone derivative with Sortase A from Staphylococcus aureus.
Prasanna VL, Narender R., Onl J Bioinform., 18(1):30-38, 2017

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ABSTRACT: Homology docking model for histone deacetylase 8.
Moghaddas AM., Onl J Bioinform., 18(1):19-29, 2017

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ABSTRACT: Computational identification of inhibitors of PGES-1 in rheumatoid arthritis by virtual screening and molecular docking.
Kumar P, Mishra N., Onl J Bioinform., 18(1):7-18, 2017.

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ABSTRACT: In-Silico human, cow and sheep milk alpha casein S1, fibronectin, lactoferrin and lysozyme for prediction of hypersensitivity and malnutrition in infants
Pandey J, Sharma S., Onl J Bioinform., 18(1):1-6, 2017.

2016 (3)

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ABSTRACT: In Silico model and chromosomal location of TaPHT1;1 high-affinity phosphate transporter gene in wheat (Triticum aestivum L.).
Kumar A, Rathore M, Singh KP, Tyagi PK, Sharma N., . Onl J Bioinform., 17(3):180-191, 2016

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ABSTRACT: Review:Molecular modeling computer aided drug design.
Singh N, Upadhyay S, Jaiswar A, Tripathi A, Mishra N., Onl J Bioinform., 17(3):168-179, 2016.

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ABSTRACT: Homology modeling and molecular dynamic ABC transporter1 anti-bacterial in Antheraea mylitta.
Madipelli K, Rao PN., Onl J Bioinform., 17(3):159-167, 2016.

2016 (2)

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ABSTRACT: In silico binding and inhibition of Sortase A methicillin resistant Staphylococcus aureus.
Souri S, Sharma AK, Sharma G., Onl J Bioinform., 17(2):148-158, 2016.

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ABSTRACT: Molecular cloning and In-silico analysis of pectin lyase from Aspergillus niger MTCC 404
Dubey AK, Yadav S, Anand G, Singh VK, Yadav D., Onl J Bioinform., 17(2):136-147, 2016.

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ABSTRACT: In-Silico docking marine Streptomyces coumarin-6-ol, 3, 4-dihydro-4, 4, 5, 7-tetramethyl with bacterial and blood protein.

Abirami M, Kannabiran K., Onl J Bioinform, 17(2):129-135, 2016.


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ABSTRACT: Molecular docking of indolizine heterocyclics.

Murali Krishna K, Lekha P, Raman PK, Raveendra Reddy P., Onl J Bioinform., 17(2):116-128, 2016

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ABSTRACT: Molecular docking imidazo[1,2-b]pyridazine on methicillin resistant Staphylococcus aureus.

Raman PK, Murali Krishna K, Ramana PV*., Onl J Bioinform., 17(2):105-115, 2016.

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ABSTRACT: In silico docking of curcumin inhibitor with α-Glucosidase in type 2 diabetes.

Tarigopula SP., Onl J Bioinform., 17(2):96-104, 2016.

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ABSTRACT: In silico dock-binding for anti-cancer oxadiazole derivatives.

Vijay JT, Babu KV, Uma A., Onl J Bioinform, 17(2):80-95, 2016.

2016 (1)

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ABSTRACT: Carragheen (Chondrus crispus) seaweed molecular marker database (CaMM-Db).

Bhati J, Sahu TK, Pande PK., , Onl J Bioinform., 17(1):69-79, 2016

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ABSTRACT: In silico modelling-docking diazepin derivatives.

Pyde AN., Onl J Bioinform., 17(1):53-68, 2016

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ABSTRACT: Homology modelling and structure for Neplanocin A derivatives.

Urama DC, Tarigopula SP, Pasha KM, Daddam JR., , Onl J Bioinform., 17(1):41-52, 2016.

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ABSTRACT: In silico agonist for human extracellular superoxide dismutase SOD.

Hema K, Swargam S, Pradeep N, Umamaheswari A., Onl J Bioinform., 17(1):29-40, 2016.

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ABSTRACT: In silico 3D structure of pectin lyase protein of Aspergillus flavus NRRL 3357.

Dubey AK, Yadav S, Tanveer A, Anand G Singh VK, Yadav D. Pectin., Onl J Bioinform., 17(1):13-28, 2016

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ABSTRACT: Structure based drug design targets for severe acute respiratory syndrome (sars) coronavirus.

Kumar V, Goswami S, Namdeo R, Jain R., Onl J Bioinform., 17(1):1-12, 2016.

2015 (3)

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ABSTRACT: Machine learning classification for HIV biomarkers.

Dubey A, Onl J Bioinform., 16(3): 344-356, 2015.

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ABSTRACT: Gene expression in sickle cell patients: Putative genes associated with variability in pleiotropic phenotype.

Das I, Mishra H, Khodiar PK, Patra PK., Gene expression in sickle cell patients, Onl J Bioinform., 16(3): 327-343, 2015.

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ABSTRACT: Model simulation phylogenetics of erythropoietin expressed from cho cell line.

Mettaa MK, Tantravahib S, Daddam JR., Onl J Bioinform., 16(3): 318-326, 2015.

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ABSTRACT: In silico analysis of arsenate reductase gene in biological systems.

Tiwari S, Sarangi BK, Nasim J, Yadav D., Onl J Bioinform., 16(3): 303-317, 2015.

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ABSTRACT: Model protein docking l-glutaminase for anti-cancer activity.

Vijay Jesuraj SA, Jeya Praya SM, Ravikumar M., Onl J Bioinform., 16(3): 293-302, 2015

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ABSTRACT: Molecular modelling-docking cell surface receptor CD10 target for doxorubicin.

Mishra D, Singh VK, Singh S, Narayan G, , Onl J Bioinform., 16 (3): 286-292, 2015.

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ABSTRACT: 3D QSAR, CoMFA and CoMSIA In silico docking of natural flavonoid cancer inhibitors.

Kumar Gunda S., Onl J Bioinform., 16 (3): 263-285, 2015.

2015 (2)

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ABSTRACT: Review:Genome-wide copy number variation from next generation sequencing data.

Loukatou S, Chatzinikolaou P, Vlachakis D, Kossida S., Onl J Bioinform., 16 (2): 254-262, 2015.

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ABSTRACT: Integrating eHealth in HIV/AIDs intervention programmes in Nigeria,

Taiwo OS., Onl J Bioinform., 16 (2): 247-253, 2015.

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ABSTRACT: Biclustering of tuberculosis microarray data.

Pradhan S, Verma CK., Onl J Bioinform., 16 (2): 226-246, 2015

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ABSTRACT: Anti-tubercular activity and molecular docking of dihydro-pyrimidinone derivatives.

Beda PD, Vedula SG, Daddam JR., Onl J Bioinform., 16 (2): 202-225, 2015.

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ABSTRACT: Respiratory gating for lung cancer radiotherapy.

KonstantaraK, Danelakis A, Tzogogianni D, Polychronidou E, Venieris G, Papageorgiou L, Vlachakis D., Onl J Bioinform., 16 (2): 194-201, 2015.

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ABSTRACT: Predicting evolution of colored vision in mammals through systems biology.

Sharma S, Saxena P., Onl J Bioinform., 16 (2): 188-193, 2015.

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ABSTRACT: Antibacterial activity and molecular docking in Musa paradisiaca (Banana) flavonoids.

Sree J, Gunda SK., Onl J Bioinform., 16 (2): 179-187, 2015

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ABSTRACT: In Silico 2, 5- disubstituted-1, 3, 4-oxadiazole antibacterial activity.

Nagarjun PA, Rao PN., Onl J Bioinform., 16 (2): 156-178, 2015.

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ABSTRACT: In silico model simulation docking of tyrosine kinase inhibiting leukemia quinazolines.

Bathula R, Rani Satla S., , Onl J Bioinform., 16 (2): 144-155, 2015.

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ABSTRACT: Prioritizing In Silico drug targets in metabolic pathway of Laribacter hongkongensis.

Aslam Tayubi I., Onl J Bioinform., 16 (2): 129-143, 2015

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ABSTRACT: In Silico inhibitors for PTP1B as a drug target for diabetes.

Galande S, Ambhore S, Jena L, Kumar S., Onl J Bioinform, 16 (2): 121-128, 2015.

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ABSTRACT: In silico model design for GPI12 anchored protein,

Bhagyasri RG, Chandrasekhar KB, Muralidhara RD., IOnl J Bioinform., 16 (2): 109-120, 2015

2015 (1)

Authors: This journal requires raw data and program files for analysis.

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ABSTRACT: In silico binding of Piper longum plant anti-diabetic derivatives with alpha glucosidase.

Sharmila UV, Sharma AR, Sharma G., Onl J Bioinform, 16 (1): 98-108, 2015

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ABSTRACT: In silico docking of meliantrol, β-sitosterol, curcumin, vanillic and syringic acids to penicillin binding protein 2a on methicillin resistant Staphylococcus aureus.

Masroor H, Parvateesam M, Daddam JR, Naidu NV., I Onl J Bioinform., 16 (1): 88-97, 2015

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ABSTRACT: Molecular modeling and in-silico characterization of Alkaline Protease from Bacillus circulans MTCC 7906.

Sharma AD, Kaur GRI, Kocher S1, Onl J Bioinform., 16 (1): 61-87, 2015

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ABSTRACT: Biological databases as key for data integration, analysis and visualization.

Polychronidou E, Vlachakis D, Papageorgiou L, Vlamos P., , Onl J Bioinform., 16 (1): 51-60, 2015.

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ABSTRACT: Support vector machine to predict human death domain protein-protein interactions.

Nemade PA, Pardasani KA., Onl J Bioinform., 16 (1): 29-50, 2015.

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ABSTRACT: Characterization of mouse body insulin genes with genetic network systems.

Zeeshan A, VermaCK., Onl J Bioinform., 16 (1): 18-28, 2015.

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ABSTRACT: Modelling simulation phylogenetics of leukemia FMS tyrosine kinase 3 (FLT3).

Kotha P, Rayalu Daddam J, Sai Gopal Divi VR, Dakinedi SR, Dowlathabad M., Onl J Bioinfo., 16 (1): 8-17, 2015

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ABSTRACT: Systems biology prediction of evolutionary process for coloured vision in mammals.

Sharma S, Saxena P., Onl J Bioinform, 16 (1): 1-7, 2015.

2014 (3)

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Re-annotation of hypothetical proteins of Geobacter sulfurreducens PCA by integrated computation,

Selvaraj A, Chinnasamy Perumal R, Chowdhary N, Kannan Kandavel P, Radhakrishnan V, Kumar Gopal R., Onl J Bioinform., 15 (3): 253-266, 2014.

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Data mining techniques for biological sequence classification

Dubey A., Onl J Bioinform., 15 (3): 243-252, 2014

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Characterization of mouse insulin gene through genetic and network approaches.

Arif Z, Verma CK., Onl J Bioinform., 15 (3): 231-242, 2014.

2014 (2)

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In silico drug design inhibitor for methylene-tetrahydrofolate reductase.

Ram G., Onl J Bioinform., 15 (2): 218-230, 2014.

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Classification of Type-2 Diabetes Microarray Data by Support Vector Machine and Naive Bayes Classifier

Mekala R, Verma CH., , Onl J Bioinform., 15 (2): 210-217, 2014.

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In silico 17β-Hydroxysteroid dehydrogenase fungicide for leaf spot disease (Cercospora sp).

Singh VK, Chand R, SinghBD., Onl J Bioinform., 15 (2): 198-209, 2014

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Structure of tumor suppressor gene protein (PTEN) by homology modelling.

Rathore B, Shakya M., Onl J Bioinform., 15 (2): 191-197, 2014.

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In silico identification of B- and T-cell epitopes from a new wheat associated (Triticum aestivum) allergen Tri a 37,.

Tuhin Ali M, Palit P, Hasan S., Onl J Bioinform., 15 (2): 178-190, 2014

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Molecular dynamic differences between isoform specific and class I PI3K inhibitor.

Shrivastava A, Prasad KD, Giri A., Onl J Bioinform., 15 (2): 168-177, 2014.

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Finite element model of calcium distribution in oocytes for one dimensional unsteady state case.

Ahmad Naik P, Pardasani KR., Onl J Bioinform., 15 (2): 157-167, 2014

2014 (1)

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ABSTRACT: Mining quantitative associations in peptide sequences of mosquito borne flavivirus.

Rajput P, Chouhan U., Onl J Bioinform., 15 (1): 141-156, 2014.


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ABSTRACT: ASPMP – A Biochemical Pathway Resource for Aspergillus terreus NIH2624.

Subazini TK, Ramesh Kumar G., Onl J Bioinform 15 (1): 133-140, 2014.

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ABSTRACT: In silico identification of universal HLA stimulating B and T-cell restricted mage epitopes for vaccine development.

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ABSTRACT: Calculating binding free energies and docking scores with PI3K inhibitors,

Shrivastava A, Durga Prasad K, Giri A., Onl J Bioinform., 15(1):106-113, 2014.

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ABSTRACT:   Molecular dynamic simulation docking inhibitors for falcipain – 2.

Saddala MS, Babu DK, Bhavani G, Ayisha S, Usha Rani A., Onl J Bioinform., 15(1): 98-105, 2014.

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ABSTRACT:   Structure prediction of alpha-synuclein protein and link with neurodegenerative disease.

Singh R, Gaur NK, Mohan A, Gangwar P., Onl J Bioinform., 15(1)87-97, 2014.

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ABSTRACT:   Functional diversity of melanoma antigen proteins implicated in tumor/cancer related pathways.

Achinko DA, Ojwank AME, Dormer A., Onl J Bioinform., 15 (1): 54-86, 2014.


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ABSTRACT: Proteome database for Mycobacterium tuberculosis strains H37Rv versus H37Ra.

Jena L, Kumar S., Onl J Bioinform., 15(1): 49-53, 2014.


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ABSTRACT: Prediction of secondary structure of human OPTC (Opticin) gene in region 1q32.1 of chromosome 1.

Kumar A, Khawaja Z., Onl J Bioinform., 15(1): 35-48, 2014


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ABSTRACT: A novel In silico peptide vaccine design for Streptococcus mutans.

Bower B, Dormer A., , Onl J Bioinform 15(1):1-34, 2014.

2013 (3)

Authors: This journal requires raw data and program files for analysis.

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ABSTRACT: In silico inhibitors for human papillomavirus 16 E7 protein,

Kumar S, Jena L, Mohod K, Daf S, Varma A., Onl J Bioinform., 14 (3): 302-310, 2013.


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ABSTRACT: In silico inhibitors for falcipain-3 in Plasmodium falciparum.

Saddala MS, Gayathri P, Obaiah J,. Vallamma C. Usha Rani A., Onl J Bioinform., 14 (3): 293-301, 2013.

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Virtual dihydroxy acid dehydratase inhibitors for tuberculosis

Jena L, Kumar S., , Onl J Bioinform., 14 (3): 282-292, 2013.

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ABSTRACT: Homology modelling of laccase from white-rot fungus Schizophyllum commune.

Reddy GV, Vijaya CH, Venkateswarlu K., , Onl J Bioinform., Volume 14 (3): 274-281, 2013.

2013 (2)

Authors: This journal requires raw data and program files for analysis.

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ABSTRACT: Identification of PI3K inhibitor scaffold based on ligand and receptor pharmacophore model.

Shrivastava A, Prasad KD, Giri A., Onl J Bioinform., 14 (2): 258-273, 2013.

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ABSTRACT: In silico proteins of Flavobacterium columnare as therapeutic candidates for columnaris disease in fish.

Murali S, Kumar S, Rajendran KV, Jahageerdar S., Onl J Bioinform., 14 (2): 235-257, 2013.


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ABSTRACT: Virtual analysis of catalytic site in Plasmodium yoelii yoelii.

Kumar A., Onl J Bioinform., 14 (2): 226-234, 2013.

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ABSTRACT:Virtual inhibitors of L-Type calcium channel.

Saddala MS, Rani U., Onl J Bioinform., 14(2):213-225, 2013.

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ABSTRACT: Selection pressure analysis of African swine fever virus attachment protein p12 gene.

Chen YF, Chen Y. Onl J Bioinform., 14(2):207-212, 2013.

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ABSTRACT: Monte Carlo with simulated annealing model for constructing phylogenetic network from nucleotide sequences.

Dwivedi AK, Chouhan U., Onl J Bioinform 14 (2): 197-206, 2013.

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ABSTRACT: Structure based virtual screening for DNS methyl transferase-1 inhibitors.

Saddala MS, Jyothi P, Usha Rani A., Onl J Bioinform 14 (2): 186-196, 2013.

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ABSTRACT: Virtual In silico inhibitors of estrogen receptor alpha (ERα)

Saddala MS, Mallikarjuna A, Latha U, Usha Rani A., Onl J Bioinform 14 (2): 168-185, 2013.

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ABSTRACT:Evolutionary lineage of lateral gene transfer in biofilm-forming human pathogenic microorganisms.

Mathur N, Chug R., Onl J Bioinform., 14 (2): 160-167, 2013

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ABSTRACT: In Silico Inhibitors for Plasmodium falciparum lactate dehydrogenase.

Saddala MS, Kumar KK, Usha Rani A., Onl J Bioinform., 14 (2): 146-159, 2013

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ABSTRACT: Subtractive Genomic identification of drug targets in Leishmania Donovani and l. Infantum.

Shree T, Khan SA, Saxena S., Onl J Bioinform., 14 (2): 138-145, 2013

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ABSTRACT: In silico genome analyses of putative white spot syndrome virus vaccine sites.

Amos SJ, Nayak S, Umadevi K., Onl J Bioinform., 14 (2): 126-137, 2013

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ABSTRACT: Predicted structure of an unknown protein sequence in US patent 8211428.

Kumar A, Zakir Khawaja M, Ul Haq Qureshi A., A. Onl J Bioinform., 14 (2): 118-125, 2013.

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ABSTRACT: In Silico gene prediction for autosomal recessive cone-rod dystrophy (CORD),

Khattak NA, Rauf S, Sehgal SA, Shahwar D and Ismail M., Onl J Bioinform., 14 (2): 104-117, 2013

2013 (1)

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ABSTRACT: In silico prediction of Staphylococcus aureus epitopes (Mastitis vaccine),

Bajetha G, Rai S, Rai A., 14(1):96-103, 2013.


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ABSTRACT: New footprints into metazoan C-1 family cadherin evolution
Hasenahuer MA, Casco VH, Izaguirre MF., 14(1):76-95, 2013.

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ABSTRACT: Identification of single nucleotide polymophisms using CLC and SeqMan transcriptome sequencing data
Sajnani MR, Bhatt VD, Joshi CG., 14(1):66-75, 2013.

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ABSTRACT: Sequence informatics of carbonic anhydrase from different source organisms

Dwivedi VD, Arora S, Sharma J, Pandey A., 14(1):56-65, 2013.

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ABSTRACT: Amino acid composition model for prediction and identification of Alpha and Epsilon-proteobacteria

Shanker A, Pardasani KR., 14(1):51-55, 2013.

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ABSTRACT: In Silico drug targets for infectious endocarditis.

Priyadarshini V, Pradhan D, Munikumar M, Swargam S, Umamaheswari A, Rajasekhar D., 14(1):32-50, 2013.

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ABSTRACT:Statistical analysis of codon usage in extremely halophilic bacterium Salinibacter ruber DSM13855.

Sanjukta RK, Farooqi MS, Sharma N, Rai N, Mishra DC, Rai A, Singh DP, Chaturvedi KK., 14(1):15-31, 2013.

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ABSTRACT:In silico prediction and conservancy analysis of promiscuous epitopes in novel adenovirus HAdV-65.

Islam R, Khan L, Gazi A, Hossain M, Shafrin F, Zaman A, Polash AH., 14(1):9-14, 2013.

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ABSTRACT: In silico analysis of flavopiridol analogues with Cdk2 for cancer therapy.

Jabin D, Vidyarthi AS, Shankaracharya S., 14(1):1-8, 2013.

2012 (3)

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ABSTRACT:Prediction of crucial water molecules during interaction of curcumin and demethoxycurcumin at active sites of multiple target proteins

Singh N, Butle A, Misra K., 13(3):418-431, 2012.

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ABSTRACT: Amino acid sequences based phylogenetic and motif assessment of lipases from different organism

Yadav SK, Dubey AK, Yadav S, Bisht D, Darmwal NS, Yadav D., 13(3):400-417, 2012.

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ABSTRACT: Glycosyltransferase sequence informatics from different source organisms

Dwivedi VD, Pandey AK, Mishra SK., 13(3):390-398, 2012.

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ABSTRACT: K-shell decomposition based analysis of S. pombe protein networks

Singh PK Shakya M., 13(3):382-390, 2012

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ABSTRACT: A Parkinson’s disease mitochondrial dysfunction pathway with gene hubs.
Balakrishnan ik, Rangasamy s, Natarajan J., 13(3):375-381, 2012.

2012 (2) Under redaction 2018

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ABSTRACT:3D Model of Zn2+ Binding Domain of Peptidase M48 Ste24p from Cyanothece Sp. (Strain PCC 7822)

Patra MC, Rath SN, Bhoi GK, Pradhan SK., 13(2):360-374, 2012.

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ABSTRACT:Virtual PfkB Mycobacterium tuberculosis H37Rv protein

Nayak S, Umadevi K, Jagannath M., 13(2):331-359, 2012.

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ABSTRACT:Characterization of Coilin protein nucleotide binding region in Homo sapiens.

Zaman A., 13(2):314-330, 2012.

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ABSTRACT:Riboswitch as a target for Streptococcus pneumoniae.

Mujwar S, Pardasani KR., 13(2):285-313, 2012.

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ABSTRACT:Machine learning models to classify HIV membrane and soluble proteins

Dubey A, Chouhan U., 13(2):274-284, 2012.

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ABSTRACT:Homology and molecular docking of Pseudomonas aeruginosa RND MexY efflux pump

Bhaskar BV, Munichandrababu T, Bhuvaneswar C, Rajendra W., 13(2):260-273, 2012.

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ABSTRACT:In silico characterization of bacterial, fungal and plant polygalacturonase protein sequence

Dubey AK, Yadav S, Rajput R, Anand G, Yadav D. 13(2):246-259, 2012.

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ABSTRACT:Amplification, In-silico classification, characterization and molecular modeling of Histone H2B gene from Setaria cervi

Yadav SS, SinghVK, Liebau E, Rathaur S., 13(2):232-245, 2012.

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ABSTRACT:Molecular docking of a beta-2-microglobulin drug target

Navya P, Hema K, Munikumar M, Swargam S, Umamaheswari A., 13(2):222-231, 2012.

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ABSTRACT:Microarray informatics and virtual screening for acute myeloid leukemia targets.

Shree T, Banerjee S, Srivastava S., 13(2):214-221, 2012.

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ABSTRACT:Mining fuzzy associations among amino acids of class A GPCRs.

Kumari T, Pardasani KR., 13(2):202-213, 2012.



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ABSTRACT:Drug target H1N2 (swine influenza) and H5N2 (avian influenza):ligand structure design

Sivan A, Antony S, Reegan AD., 13(2):192-201, 2012.



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ABSTRACT:Amino acid sequence analysis of glutamate dehydrogenase from different source organisms

Dwivedi VD, Mishra SK., 13(2):184-191, 2012.



2012 (1) Under redaction 2018

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ABSTRACT:In silico novel MYB transcription factor [EaMYB2R] from Erianthus arundinaceus.
Kulkarni P, Devarumath RM., 13(1):167-183, 2012.



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ABSTRACT:In Silico characterization of glycosidase protein sequences from bacterial sources. Comment on and/or review this paper
Yadav V, Yadav KDS., 13(1):156-166, 2012.



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ABSTRACT:In silico analysis of rice and Arabidopsis spp. PIP genes.
Ramole S, Chouhan U., 13(1):144-155, 2012.



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ABSTRACT:Pharmacophore model of Dengue virus RNA dependent RNA polymerase
Shree T, Asnet JM, Kumar R, Mohan T, Shenbagarathai R., 13 (1):130-143, 2012



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ABSTRACT:In silico analysis and homology model of legume antioxidant proteins.
Sarika M, Iquebal A, Rai A., 13 (1):120-129, 2012



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ABSTRACT:EST secretome analysis of Radopholus similis nematode.
Sangeetha K, Babu RO, Eapen SJ., 13(1):103-119, 2012



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ABSTRACT:Homology model of sugarcane soluble acid invertase
Hemanthkumar M, Umamaheswari A., 13(1):93-102, 2012



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ABSTRACT:Insights to sequences of PCR amplified pectin lyase genes from different fungal strains
Dubey AK, Yadav S, Anand G, Bisht NC, Yadav D., 13(1):80-92, 2012


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ABSTRACT:Molecular modelling and docking of Brugia malayi glutathione reductase
Yadav SS, Singh VK, Liebau E, Rathaur S., 13(1):59-79, 2012


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ABSTRACT:In silico homology model of mutated PTEN protein inducing meningioma
Kaur J, Mohan A, Kumar S, Pallavi A, Malakar K., 13(1):50-58, 2012


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ABSTRACT:Simulation of riboflavin synthase in Eremothecium gossypii conversion of 6,7-dimethyl-8-ribityllumazine to riboflavin
Idrus S, Tambunan USF., 13(1):41-49, 2012

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ABSTRACT:Model and molecular docking substrate stabilization of Microsporum canis keratinase
Karthik MVK, Syed H, Goswami T, Shukla P., 13(1):33-40, 2012

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ABSTRACT:In silico analysis of bacterial DNA polymerases and molecular phylogeny.
Sridhar M, Manjunath A, Bala Chauhan J, Zameer F., 13(1):27-32, 2012

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ABSTRACT:In silico horizontal gene transfer and functional motif in GshF protein of Listeria monocytogenes
Srinivas V, Kreft J, Gopal S., 13(1):14-26, 2012

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ABSTRACT:In Silico analysis of a consensus QTL for drought resistance in rice (Oryza Sativa L.)

Pradeepa N, Shanmuga PP, Jebakumar Prince KS, Kavitha S, Poornima R, Prabhakar MS . Chandra Babu R., 13(1):1-13, 2012

2011 (2).

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ABSTRACT:In Silico substrate specificity in bmgt1 and bmgt2 genes of Bacopa monniera glycosyltransferases

Sharma R, Ruby R, Khan BM, Suresh CG., 12(2):413-430, 2011

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ABSTRACT:In Silico model of Homo sapiens Nectin-4: a novel anticancer drug target.

Das D, Preet R, Mohapatra P, Satapathy SR, Kundu CN., 12(2):395-412, 2011

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ABSTRACT:Prediction of 3D model of nuclear export protein of influenza A virus.

Khewariya D., 12(2):386-393, 2011


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ABSTRACT:Evaluation of the severity of asthma by using an artificial neural network

Kumar A, Singh S, Vennila JJ., 12(2):379-385, 2011

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ABSTRACT:In silico T cell antigens from proteome of H1N2 swine influenza A virus

Verma SK, Singh Yadav SK, Kumar A., 12(2):371-378, 2011

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ABSTRACT:Analysis of inhibitory activity of 2, 4-diamino-5-methyl-5-deazapteridine (DMDP) derivatives against recombinant human dihydrofolate reductase.

Singh S, Kumar A, Vennila JJ., 12(2):357-370, 2011


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ABSTRACT:Model of a Zn2+ binding domain of peptidase M48 Ste24p from Cyanothece Sp. (Strain PCC 7822)

Patra MC, Rath SN, Bhoi GK, Pradhan SK., 12(2):345-356, 2011


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ABSTRACT:Epigenomic regulation of genes involved in anti-stress mechanism in Arabidopsis thaliana using high-throughput genomic data

Singh N, Mishra H, Misra K., 12(2):329-344, 2011

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ABSTRACT:Genetic diversity of hatchery stocks of Macrobrachiumrosenbergii assessed by microsatellite DNA,

Suresh E, Reddy AK, Krishna G, Chaudhari A, Sharma R, Babu PG., 12(2):323-328, 2011



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ABSTRACT:Computational analysis of K-Hefutoxin interaction with Kv channels and L-carnitine for molecule against scorpion envenomation.

Umamaheswari A, Pradhan D, Priyadarshini V, Munikumar M, Rao S., 12(2):304-322, 2011

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ABSTRACT:Molecular docking ribavirin with RNA-dependent RNA polymerase crimean-congo hemorrhagic fever virus

Kumar Verma S, Singh Yadav SP, Singh R, Kumar A., 12(2):304-313, 2011

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ABSTRACT:Toxicity of butachlor assessed by molecular docking to NusB and GroES protein.

Kumari N, Singh VK, Narayan OP, Rai LC., 12(2):289-303, 2011

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ABSTRACT:Neighbour joining microarray data clustering algorithm

Rajendran B, Murugan V, Premnath K, Gomez P., 12(2):274-288, 2011

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ABSTRACT:Phylogenetic analysis of mitochondrial 16s rRNA and NADH Dehydrogenase genes of Takifugu (Pisces: Tetraodontiformes: Tetraodontid).

Jagannath M, Umadevi K, Subhalaxmi N., 12(2):255-273, 2011

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ABSTRACT:In-silico inhibition of telomerase associated proteins.

Jyoti P, Vidyarthi AS, Shankaracharya M., 12(2):243-254, 2011

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ABSTRACT:A least squares method to determine reticulation in eight grass plastomes

Mathur R, Adlakha N., 12(2):230-242, 2011

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ABSTRACT:Homology modeling and active site analysis of MurB Rrductase: A potential drug target of Legionella pneumophila.

Priyadarshini V, Pradhan D, Munikumar M, Umamaheswari A., 12(2):217-229, 2011

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ABSTRACT:Comparative modeling studies of a hypothetical protein YHR105W from S.Cerevisae genome.

Rathankar N, Nagendra HG., 12(2):207-216, 2011

2011 (1).



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ABSTRACT:Computational analysis of diversity coding for 3-KetoAcyl-Co A synthase 20 for fatty acid elongation pathway in plants.

Grover M, Kaur S., 12(1):198-206, 2011



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ABSTRACT:In silico identification of residues for anoxia tolerance across species

Sahu TK, Rao AR, Alka B, Behera BK, Mohapatra T., 12(1):175-197, 2011

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ABSTRACT:Detection and classification of two-component osmoregulatory systems.

Srividhya KV, Krishnaswamy S., 12(1):167-174, 2011

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ABSTRACT:Identification of potential drug targets in M1 strain of Streptococcus pyogenes by differential genomics

Trivedi N, Sarangi AN, Naik S, Aggarwal R., 12(1):149-166, 2011

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ABSTRACT:Homology interaction of acetylcholinesterase (ACh) Toxin C from Dendroaspis polylepis with human ACh

Sahu TK, Patra MC, Sarang AN., 12(1):139-148, 2011

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ABSTRACT:Algorithm to detect Denial of Service (DDoS) in Gnutella hybrid P2P network mapped to artificial immune system

Uddin M, Rahman AA., 12(1):115-138, 2011

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ABSTRACT:Molecular docking for substrate stabilization in Thermomyces lanuginosus 11 xylanases.

Karthik MVK, Shrivastava S, Shukla P., 12(1):107-114, 2011

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ABSTRACT:Virtual screening of human MEK1 protein inhibitors catechin and gw8510.

Potluri V, Pradhan D, Umamaheswari A., 12(1):98-106, 2011

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ABSTRACT:Self organizing algorithm for multiple sequence alignment

Amouda V, Buvaneswari S, Kuppuswami S., 12(1):74-84, 2011

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ABSTRACT:Partial sequence clone of canine mammary tumor metalloproteinase MMP11 catalytic domain

Sunil Kumar BV, Kataria M, Kumar R, Kumar KA, Vishwanatha Reddy AP., 12(1):66-73, 2011

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ABSTRACT:Inhibition of Farnesyl pyrophosphate by allosteric site drug binding

Kumar S, Pathak J, Asha PJ, Bandopadhyay R., 12(1):57-65, 2011

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ABSTRACT In silico epitope rabies virus vaccine.

Tomar NR, Marla SS, Chandra R, Kumar R, Kumar A., 12 (1): 46-52, 2011.

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ABSTRACT: In Silico mining of single nucleotide polymorphisms in expressed sequence tags dataset of Allium cepa L.

Radhika V, Reddy DCL, Bhardwaj A, Aswath C., 12 (1): 34-45, 2011.

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ABSTRACT Comparative evolutionary analysis of metallo-β-lactamases with reference to NDM1

Odedra D, Mallick M, Vidyarthi AS, Shankaracharya D., 12 (1): 18-33, 2011.

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ABSTRACT Prediction of mutagenicity of compounds by Support Vector Machine.

Sharma A, Kumar R, Varadwaj P., 12 (1): 9-17, 2011.

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ABSTRACT: Support vector machine classification and prediction of lyases.

Lavanya Rishishwar L, Mishra N, Pant B, Pant K, Pardasani KR, 12 (1): 1-8, 2011.

2010 (2).



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ABSTRACT Molecular identification of Pinctada oysters by mitochondrial DNA analysis.

Yassien MH, Obata M, Iman MK, Komaru A.,11 (2): 317-326, 2010.



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ABSTRACT Model ligand-binding site of 2-Amino-5-chlorophenol 1,6-dioxygenase in Comamonas sp. CNB-1.

Monika K, Muralidhara Rao D, Anuraj N, Yadav M, Nageswara Rao N, Venkateswarlu K., 11 (2): 302-316, 2010.

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ABSTRACT In silico analysis of α-L-rhamnosidase protein sequences from different source organisms.

Yadav V, Yadav D, Singh Yadav KD., 11 (2): 293-301, 2010..

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ABSTRACT Building a topological inference with qualitative criteria to predict the structural family of a protein sequence.

Gaci O., 11 (2): 11 (2): 282-292, 2010..

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ABSTRACT Predicted 3D structure, active site and ligand docking of serine acetyltransferase, a drug target for Entamoeba histolytica.

Agarwal SM, Raghav D, Kumar A., 11 (2): 11 (2): 265-281, 2010..



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ABSTRACT Analysis of array CGH data for the detection of single-cell chromosomal imbalances.
Ampe M, Verbeke G, Vanneste E, Vermeesch JR., 11 (2): 244-264, 2010.

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ABSTRACT Target sites for microRna expressed in pancreatic islets in type 2 diabetes mellitus associated genes.
Sripathi VR, Pal-Bhadra M, Arora N, Santosh S, Ray P, Banerjee AK, Murty USN, Bhadra U., 11 (2): 224-243, 2010.

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ABSTRACT XML storage model preserving relational integrity constants and complex types
Kasri LA, Chenfour N., 11 (2): 217-223, 2010.

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ABSTRACT Inferring the kinetic constants of cyclin-triggered expression of Cdc20 gene in eukaryotic cell cycle
Lecca P, Palmisano A., 11 (2): 177-216, 2010.

2010 (1)

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ABSTRACT:Full-length DNA cloning, sequence analysis and transmembrane topology modelling of putative

Trypanosoma brucei rhodesiense oligosaccharyl transferase (TbOST I).

Baticados WN, Inoue N, Sugimoto C, Nagasawa H, Baticados AM., 11 (1): 162-176, 2010.

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ABSTRACT: Statistical approach to assign functional regulators in gene expression compendia

Anyiawung FC, Verbeke G Valkenborg D, Zhao H, Marchal K, Engelen K., 11 (1): 145-161, 2010.

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ABSTRACT: Structural model of the mammalian target of rapamycin (mTOR) kinase domain

Tobak A, Arora S, Welsh WJ., 11 (1): 128-144, 2010.

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ABSTRACT: Selection and evaluation of gene-specific biomarkers in pre-clinical and clinical microarray experiments

Lin D, Shkedy Z, Molenberghs G, Talloen W, Goelhmann HWH, Bijnens L., 11 (1): 106-127, 2010.

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ABSTRACT: Functional and comparative genomics studies on Carboxydothermus hydrogenoformans specific to CO-metabolism and hydrogen production.

Rajadurai CP, Kumar GP., 11 (1): 90-105, 2010.

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ABSTRACT:  Brain tumor biomarker identification via differential gene expression analysis of microarray data using CGAP.

Ravichandran S, Jeyakumar N., 11 (1): 83-89, 2010.

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ABSTRACT: A Linear Programming Approach to Study Phylogenetic networks in Honeybee.
Chouhan U, Pasandi KR., 11 (1): 72-82, 2010.

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ABSTRACT:  In silico identification of functions enduring horizontal gene transfer in archaea: a comparative approach
Tamanna A, Nandi T., 11 (1): 59-71, 2010.

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ABSTRACT: Identification & HLA distribution analysis of CD4+ epitope-based vaccine candidates for H1N1 Swine Influenza.
Sarangi AN, Rathi B, Trivedi N, Gupta S., 11 (1): 47-58, 2010.

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ABSTRACT: Phylogenetic Clustering and Comparative Homology Modelling of Nitrobenzene Nitroreductase from Pseudomonas pseudoalcaligenes JS45 and Comamonas sp. CNB-1
Monika K, Dowlathabad MR, Spain JC, Kadiyala V., 11 (1): 38-46, 2010.

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ABSTRACT:     csPCR: A computational tool for the simulation of the Polymerase Chain Reaction
Dasu S, Williams A, Fofanov Y, Putonti C., 11 (1): 34-37, 2010.


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ABSTRACT: Structural and docking analysis of HIV-1 integrase and Transportin-SR2 interaction: Is this a more general and specific route for retroviral nuclear import and its regulation?
Shityakov S, Rethwilm A, Dandekar T., 11 (1): 19-33, 2010.


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ABSTRACT: Beyond single p-value cut-offs: Methods to improve decision making in GO enrichment analysis of microarray experiments

De Haan JR, Wehrens R, Bauerschmidt S , Van Schaik RC, Piek E, Buydens LMC., 11 (1): 1-18, 2010.

2009 (2)



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ABSTRACT:Analysis of clustered microRNA in biological pathways

Mookherjee S, Sinha M, Mukhopa dhyay S, Bhattacharyya NP, Mohanty PK., 10 (2): 280-296, 2009.

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ABSTRACT:In Silico analysis of translation initiation sites from P. falciparum
Patakottu BR, Mamidipally C, Patankar S, Noronha S., 10 (2): 259-279, 2009.

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ABSTRACT:Effect of iron deprivation on expression of sphingomyelase in pathogenic serovar Lai
Velineni S, Ramadevi S, Asuthkar S, Sritharan M., 10 (2): 241-258, 2009.

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ABSTRACT:An algorithm for edit distance of genome rearrangement based on seriate-block mutation
Zhang S, Lai J ., 10 (2): 233-240, 2009.

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ABSTRACT:Single nucleotide polymorphisms and indels in expressed sequence tag libraries of turmeric (Curcuma longa L.)
Chandrasekar A, Riju A, Sithara K, Anoop S , Santhosh J Eapen ., 10 (2): 224-232, 2009.

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ABSTRACT:Prolyzer: A wireless application for physico-chemical analysis of protein sequences
Pabla SS, Pabla SS, Sajja SP., 10 (2): 218-223, 2009.

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ABSTRACT:GENOVA: A rapid genome visualization and functional genomics software applied to strain comparisons in Staphylococcus aureus
Liang C, Wolz C, Herbert S, Bernhard J, Engelmann S, Hecker M, Götz F, Dandekar T., 10 (2): 201-217, 2009.

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ABSTRACT:Identification of active gene modules during pancreatic development
Gao S, Wang X., 10 (2):191-200, 2009.

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ABSTRACT:Use of computational and structural bioinformatic strategies in controlling fusarium wilt in cotton
Prabhakaran S, Srividya V, Bharathi N, Jayakanthan M, Manikanda Boopathi N, 10 (2):180-190, 2009.



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ABSTRACT:Comparative genomic study on context-dependence of CpG mutations:Acceleration effect of 5' T nucleotides and new evidence of strand assymetry in genes.

Wang Y, Leung FC., 10 (2): 165-179, 2009.

2009 (1)

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ABSTRACT:DyeML: XML-based format for handling natural organic dyes
Aghoutane B, Benslimane R, Chenfour N, Elbannay O, Meknassi M 10 (1):156-164, 2009



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ABSTRACT: Designing of drug for removal of methylation from Tcf21 gene in lung cancer
Gupta SK, Singh A, Srivastava M 10 (1):149-155, 2009.

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ABSTRACT: Determination of antioxidant stability in heated mixture of oils by neural network
Valantina R, Neelamegham P 10 (1):134-148, 2009

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ABSTRACT: Molecular function of Pfam Domain DUF294 by sequence analysis and homology modeling
Gononesekere NCW, Beaudry S, Tasovsky I 10 (1):125-133, 2009

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ABSTRACT:In Silico inhibitors against cinnamyl alcohol dehydrogenase (CAD) cloned and sequenced from Leucena leucocephala (tree).

Sekhar NP, Kumar RD, Sirisha VL, Prashant S Kavi Kishor PB 10 (1):103-124, 2009

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ABSTRACT: Prediction of 3- dimensional structure of GL12 of Homo Sapiens

Sreekanth P, Narayan J.,   10 (1):98-102, 2009.

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ABSTRACT: In silico identification of small interfering RNA (siRNA) in the putative genes of White Spot Syndrome virus

Singh V, Somanski P.,   10 (1):93-97, 2009.

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ABSTRACT: Genetic algorithm self-adaptive mutation rate for DNA folding (GASAMR)

Mezher MA, Khader AT   10 (1):82-92, 2009

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ABSTRACT: A statistical method for verification of rareness in DNA sequences using sequence encoding

Meena K, Menaka K, Sundar TV, Subramanian KR., 10 (1):74-81, 2009.

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ABSTRACT:Multiple contrast test for detecting monotonic does-relationship and FDR-adjusted confidence intervals for selected parameters in a microarray setting

Lin D, Shkedy Z, Burzykowski T, Yekutieli D, De Bondt A, Goehlmann H, Talloen W, Bijnens L., 10 (1):67-73, 2009.


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ABSTRACT: Prediction 0f 3-dimensional structure of ORF3 protein of genotype 1 hepatitis E virus

Rathi B, Naik S, Sarangi AN, Aggarwal R., 10 (1):60-66, 2009.


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ABSTRACT:A systematic approach to understanding E. coli responses to oxygen: from raw microarray data to pathways and published abstracts

Maleki-Dizaji S, Holcombe M, Rolfe MD, Fisher P Green J, Poole RK, Graham AI., 10 (1):51-59, 2009.

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ABSTRACT:In silico identification of tandem inter/intra-generic genetic elements (TIGE) using a random nucleotide generating Perl program.

Jha PK, Stashenko P., 10 (1):40-50, 2009.



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ABSTRACT:Derivation of a protein marker from heat denatured protein aggregate

Lahiri T, Mishra H, Kumar U, Misra K., 10 (1):29-39, 2009.



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ABSTRACT:Identification of potential targets and lead molecules for designing inhibitory drugs against Chlamydophila pneumoniae

Harikishan E, Reddy EH, Satpathy GR., 10 (1): 14-28, 2009.



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ABSTRACT:Homology modelling, molecular dynamics and docking studies of human GLUT5 protein involved in intestinal transport

Padmavathi GV, Saralakumari D, Nataraj Sekhar P., 10 (1):1-13, 2009.



2008 (2)

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ABSTRACT: In silico analysis of PCR amplified DOF (DNA binding with one finger) transcription factor domain and cloned genes from cereals and millets

Kushwaha H, Gupta N, Singh VK, Kumar A, Yadav D., 9 (2):130-145, 2008.



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ABSTRACT: MOTIFA (Motif Analizer) examination of interregional and intraregional distribution of short DNA motifs

Sucaet Y, Magrath C., 9 (2):121-129, 2008.


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ABSTRACT: Homology based 3D-structure modeling of glucose specific Sesbania stem lectin

Saxena S, Das HR, Das D, Biswas S., 9 (2):113-120, 2008.


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ABSTRACT: CateGOrizer: A web-based program to batch analyze gene ontology classification categories

Hu Zhi-Liang, Bao J, Reecy JM., 9 (2):108-112, 2008



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ABSTRACT: In-silico study on interaction of active binding sites of proteins with calcium oxalate monohydrate

Bijarnia RK, Kaur T, Naik PK, Singla SK, Tandon C., 9 (2):92-107, 2008



2008 (1)

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ABSTRACT: Identification of SSR-ESTs corresponding to alkaloid, phenylpropanoid and terpenoid biosynthesis in MAP's

Tripathy KP, Roy S, Khan F Shasany AK, Sharma A, Khanuja SPS., 9 (1):78-91, 2008


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ABSTRACT:Prediction of the putative function of mouse WDR13 protein

Murthy BSN, Pandit MW, Singh L., 9 (1):60-77, 2008.


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ABSTRACT:In silico faulty ubiquitin-proteasome system in pathogenesis of Parkinson's disease

Lecca P., 9 (1): 30-43, 2008.

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ABSTRACT:A comparison of information on molecular interactions available in full-length publications versus abstracts
Mahadevan U, Bhate J, Raghunath A, Kashyap S, Dey PC, Prakash N, Bhat B, Mol L, Wong, L., 9 (1): 21-29, 2008

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ABSTRACT: Elucidating the role of CREBBP co-activator in erythroid differentiation by literature mining and analysis

Iyer J, Raghunath A, Bhate J, Wong L., 9 (1): 12-20, 2008

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ABSTRACT:In silico analysis of P5CS gene evolution in plants

Kumari A, Patade VY, Suprasanna P., 9 (1): 1-11, 2008.

2007 (2)



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ABSTRACT:     Molecular evolution of archaeal CRISPR and Cas genes

Chatterjee R, Dutta A, Chaudhuri K, 8 (2): 189-204, 2007


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ABSTRACT: Structure and function prediction of a hypothetical protein (Q307B9_SPIPL) of Spirulina platensis (Nordstedt) Geitler
Lakshmi PTV, Uma Maheswari S, Annamalai A, 8 (2): 179-188, 2007.

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ABSTRACT: Constructing phylogeny from whole genome alignment

Chan PY, Lam TW, Liu CM, Yiu SM 8 (2) : 165-178, 2007

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ABSTRACT: The 3D structure of the Japanese Encephalitis helicase, using homology based molecular modelling techniques

Vlachakis D, Brancale A 8 (2) : 154-164, 2007

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ABSTRACT: Shape-to-String Mapping: A Novel Approach To Clustering Time-Index Biomics Data

Antoine W, Miernyk JA 8 (2) : 139-153, 2007

2007 (1)

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ABSTRACT: In-silico TAT-PTD prediction for cell penetrating peptides.

Tandon C, Aggarwal A, Goel P, Sengupta D, Naik P., 8 (1) : 115-138, 2007.


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ABSTRACT: Binding Modes, binding Affinities and ADME Screening of HIV-1 NNRTI Inhibitor: Efavirnez and its analogues.

Sengupta D, Verma D, Naik PK., 8 (1) : 99-114, 2007.



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ABSTRACT:A Unified Framework for Finding Differentially Expressed Genes in MPTP Mouse Model for Parkinson’s Disease

Shaik J, Yeasin M., 8 (1) : 84-98, 2007.


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ABSTRACT:In silico Cis-regulatory Element Analysis of Seed Storage Protein Promoters Cloned from Different Cultivars of Wheat, Rice and Oat

Yadav D, Singh VK, Singh NK^., 8 (1) : 75-83, 2007.


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ABSTRACT:In Silico Identification of Antioxidant gene G6PD in Caenorhabditis elegans

Jitendra N, Prachi S, Alpana V, Shakti S., 8 (1) : 61-74, 2007.


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ABSTRACT:An Indigenous Integration System for Biodiversity Databases

Sarinder KKS, Lim LHS, Dimyati K, Merican AF., 8 (1) : 56-60, 2007.

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ABSTRACT:Unbalanced Factorial Design: Type I, II and III Sums of Squares
Boyacioglu H, Baskan O 8 (1) : 56-55, 2007.


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ABSTRACT: MMFF94x and AMBER99 force fields using aspartic-serine-metallo proteases and sugar-binding proteins as different data sets.
Singh H, Marla SS, Verma D., 8 (1) : 45-55, 2007.


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ABSTRACT:Database and interactome map of genes involved in oral cancer

Gadewal NS, Zingde SM., 8 (1) : 41-44, 2007.


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ABSTRACT: PIDA: A new algorithm for pattern identification
Putonti C, Pettitt BM, Reid JG, Fofanov Y., 8 (1) : 30-40, 2007.

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ABSTRACT:Plasma proteome knowledgebase: exploring disease biomarker correlations
Iyer J, Srinivas VM, Khamari L, Sequeira JM, Das N, Periasamy UR, Bhate D., 8 (1) : 18-29, 2007.


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ABSTRACT: A comparison of information on molecular interactions available in full-length publications versus abstracts
Mahadevan U, Bhate J, Raghunath A, Kashyap S, Dey PC, Prakash N, Bhat B, Zachariah LL, Wong L., 8 (1) : 8-17, 2007.

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ABSTRACT:In silico tools for evaluation of conservation homology among interleukins.
Krupanidhi S, Madhukar SS, Doughman SD., 8 (1) : 1-7, 2007.

2006 (2)

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ABSTRACT: Plant promoter prediction tool and isolation of a promoter from Porteresis coarctata
Mahalakshmi S, Krishna NC, Rao KV, Reddy VD., 7 (2) : 118 - 139, 2006.

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ABSTRACT: A flexible spot recognition method for SNP microarray systems
Huang CY, Liu L., 7 (2) : 101-117, 2006.

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ABSTRACT: A computer-intensive method to analyse microarray experiments with a very small number of replications in case of heteroscedasticity
Muhammad MA, Neuhäuser M., 7 (2) : 90-100, 2006.

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ABSTRACT: In silico Homology modeling and Structure assessment of Holo (Acyl Carrier Protein) synthetase from Treponema pallidum
Dowlathabad MR, Venkata RD, Rallapalli R., 7 (2) : 85 - 89, 2006.

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ABSTRACT: Structural Classification of Protein Using Surface Roughness Index
Singha S, Lahiri T, Dasgupta AK, Chakrabarti P., 7 (2) : 74-84, 2006.

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ABSTRACT: Genomic predictions for T Lymphocyte epitopes on Plasmodium falciparum (Malaria)
Singh SP, Khan F Mishra BN., 7 (2) : 69-73, 2006.

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ABSTRACT: Conservation of the regulatory pho-box in acetoacetyl-CoA reductase promoters across bacterial PHB biosynthetic metabolic pathway
Khan F, Singh SP, Mishra BN., 7 (2) : 57-68, 2006.

2006 (1)

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ABSTRACT: Extending the Dynamic Range of Signal Intensities in DNA Microarrays
Choi D, O’Malley JP, Lasarev MR, Lapidus J, Lu X, Pattee P, Nagalla SR., 7 (1) : 46-56, 2006.


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ABSTRACT: Comparative structure analysis of Chorismate synthase

Marla S , Yalamanchili HK, Gelli P, Singh HK, Praveen G, Ghatta G, Srikanth S, Goutham K., 7 (1) : 35-45, 2006



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ABSTRACT: Statistical Potential Determining Protein Interaction Sites

Williams G., 7 (1) : 32-34, 2006

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ABSTRACT: Classification of incipient Alzheimer patients using gene expression data: Dealing with potential misdiagnosis
Robbins K, Joseph S, Zhang W, Rekaya R, Bertrand JK., 7 (1) : 22-31, 2006.



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ABSTRACT:Clusterer: extendable java application for sequence grouping and cluster analyses

Klepac-Ceraj V, Ceraj I, Polz MF., 7 (1) 15-21, 2006

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ABSTRACT: A correction for expression value dependencies in Affymetrix

Broemel F, Kruse E, Neuhäuser M, Dürig J, JÖckel KH., 7 (1) : 1-14, 2006

2005 (2)

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ABSTRACT:Boosting Speed of MS/MS Peptide Sequencing via Database Search by Spectral Profile Comparison.

Liu J, Carrillo B, Yanofsky C, Beaudrie C, Morales F, Kearney R., 6 (2) 174-183, 2005.



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ABSTRACT: The Effect of Inverse Document Frequency Weights on DNA Sequence Retrieval.

O'Kane KC., 6 (2) 162-173, 2005.

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ABSTRACT: Binding of fork head protein to DNA partly determined by base cooperation.

Mach V., 6 (2) 149-161, 2005.


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ABSTRACT: Analysis of n-nary tract frequency in the genome

Ophir D, Gera A., 6 (2) 142-148, 2005

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ABSTRACT: In silico identification of cis-regulatory elements in Mesorhizobium loti

Khan F, Agrawal S, Mishra BN 6 (2) : 129-141, 2005

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ABSTRACT:A microarray model for computation of absolute gene expression level.

Xu, M., 6 (2): 121-128, 2005.

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ABSTRACT:MIPE an XML format to facilitate the storage and exchange of PCR-related data.

Aerts JA, Veenendaal T., 6 (2) : 114-120, 2005.

2005 (1)



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ABSTRACT: Automated Long Oligo Design on Consensus Regions of Similar Genomes.
Schretter C, Milinkovitch MC., 6 (1) 107 -113, 2005.


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ABSTRACT: Combining Kernel Dimension-Reduction with Regularized Classifiers for Tissue Categorization.
Shen L, Tan EC., 6 (1) : 91-106, 2005.

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ABSTRACT: In silico identification and modelling of a putative iron-regulated TonB-dependant outer membrane receptor protein

from the genome of Leptospira interrogans serovar Lai.
Sritharan M, Ramadevi S, Pasupala N, Asuthkar S, Tajne S., 6 (1) : 74-90, 2005.

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ABSTRACT: Eulerian Superpath Approach to Correct Sequencing Error in Shotgun Assembly

Shi W, Zhou W, Zheng W., 6 (1) : 65-73, 2005.

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ABSTRACT: From prediction of subcellular localization to functional classification: Discrimination of DNA- packing and other nuclear proteins
Höglund A, Dönnes P, Adolph HW, Kohlbacher O., 6 (1) : 51-64, 2005.

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ABSTRACT: Substitution of polymorphic amino acids in proteins:Predicting functional alterations using amino acid properties.
Baksi K, Bhattacharyya NP., 6 (1) : 42-50, 2005.



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ABSTRACT: Morphometric and Distance Computational Software for evolutionary studies.
Carvajal-Rodríguez A, Rodríguez MG., 6 (1) : 34-41, 2005.


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ABSTRACT: Support vector machines and bioinformatics.

Sethi RJ., 6 (1) : 22-33, 2005.

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ABSTRACT: A novel method to predict protein subcellular localizations.
Huang J, Shi F., 6 (1) : 8-21, 2005.


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ABSTRACT: MolVRML: build VRML models of 3D molecular structures.
Zou Y., 6 (1) :1-7, 2005.


2004



ABSTRACT: Prediction of transcriptional regulation by Dlx and Msx homeodomain proteins
Swarnalatha M, Jutur PP, Amouda V, Mathur PP, Reddy AR., 5 : 132-145, 2004.



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ABSTRACT: In silico gene identification and homology modeling of Chorismate synthase in Clostridium difficile

Sunita T, Ramadevi S., 5 :129-131, 2004.


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ABSTRACT: MCM-Based clustering for time-course gene expression data

Wu FX, Zhang WJ, Kusalik AJ., 5 :102-128, 2004.


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ABSTRACT: Parallel DNA fragment assembly algorithm based on Eulerian superpath.

Zheng W, Shi W, Zhou W., 5 : 91-101, 2004.


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ABSTRACT: Bayesian mixture modelling of species divergence.
Adam A, Mengersen K, Baker P., 5 : 69-90, 2004.


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ABSTRACT: Reliability of RNA secondary structure prediction with XNAfold.

Zou Y., 5: 59-68, 2004.


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ABSTRACT: Wave analysis of microarray expression as predictor of gene expression in tumors.

Gupta A, Agrawal S 5 : 49-58, 2004.

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ABSTRACT: Phylogenetic clustering and secondary structural analysis of Plant Terpenoid Synthases.

Singh IV, Agrawal S, Khan F, Mishra BN 5 : 32-48, 2004.


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ABSTRACT: GASP: a new genetic algorithm (based on) surviving probability.

Carvajal-Rodríguez A 5 : 23-31, 2004.


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ABSTRACT: Prediction of protein homo-oligomers by incorporating quasi-sequence-order effect.

Zhang SW, Pan Q, Zhang HC, Wu YH, Shi JU 5 : 13-22, 2004.


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ABSTRACT: Molecular phylogenetics and functional evolution of major RNA recognition domains of recently cloned characterized autoimmune RNA-binding particle.

Suleymanoglu E 5: 1-12, 2004.



2003

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ABSTRACT: Identification of GltC transcription factor binding DNA motifs and its novel co-regulated genes in nitrogen fixing bacteria.

Khan F, Agrawal S, Mishra BN., 4:106-114, 2003


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ABSTRACT: Matching carbohydrate-binding domains in Arabidopsis thaliana genome: development of a lectin database.
Moreno FB, Facó F, Ceccatto VM, Sampaio AH, Costa ABS, Freitas JLT, Nogueira LL, Lima ME, Lima-Filho JL, Cavada BS, 4:96-105, 2003



2002

FULL-TEXT:[WORD] [PDF]

ABSTRACT: In Silico Markovian Bioinformatics for predicting ¹Ha-NMR chemical shifts in mouse Epidermis Growth Factor(mEGF).
Díaz HG, De Armas RR, Uriarte E., 3:83-95, 2002 .

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ABSTRACT: Simple Object Access Protocol (SOAP) for Bioinformatic Software Interoperability.

Xia Y, Stinner RE, Wang X., 3:74-82, 2002.

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ABSTRACT: BAO, A Biological and Chemical Ontology For Information Integration.

Ben-Miled Z, Webster YW, Nianhua L, Bukres O, Nayar AK, Martin J, Oppelt R., 3:60-73, 2002.

FULL-TEXT: [WORD] [PDF].

ABSTRACT: A software package for drawing ideograms automatically.

BÖhringer S, GÖdde R, BÖhringer D, Schulte T, Epplen JT., 3 : 51-59, 2002

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ABSTRACT: The corporate information factory as a Bioinformatics framework.

Casey RM., 3:42-50, 2002.


2001

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ABSTRACT: An unsupervised neural network approach for discovery of gene expression patterns in B-cell lymphoma.

Azuaje F., 2:26-41, 2001.

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ABSTRACT: Development of a web-based informatics educational exercize in genomics.

Flower R., 2:22-25, 2001



1996-2000

FULL-TEXT: [WORD] [PDF]

ABSTRACT: Bioinformatics and Extended Markup Language (XML).
Guerrini VH, Jackson D., 1:12-21, 2000.

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