MAIN


©1996-2019. All Rights Reserved. Online Journal of Bioinformatics . You may not store these pages in any form except for your own personal use. All other usage or distribution is illegal under international copyright treaties. Permission to use any of these pages in any other way besides the  before mentioned must be gained in writing from the publisher. This article is exclusively copyrighted in its entirety to OJB publications. This article may be copied once but may not be, reproduced or  re-transmitted without the express permission of the editors. This journal satisfies the refereeing requirements (DEST) for the Higher Education Research Data Collection (Australia). Linking:To link to this page or any pages linking to this page you must link directly to this page only here rather than put up your own page.


OJBTM

Online Journal of Bioinformatics©

 

Volume 19 (1):1-7, 2018.


Detection of domain boundaries in proteins by plotting energy of Non-Bonded Interactions

as function of in silico chain truncation in native structural format.

 

Guptasarma P*

 

Institute of Microbial Technology, Sector 39-A, Chandigarh, India

 

ABSTRACT

 

Guptasarma P., Detecting domain boundaries in proteins by plotting of the Energy of Non-Bonded Interactions (ENBI) as a function of in silico chain truncation in native structural format, Onl J Bioinform,  19 (1):1-12, 2018. Plotting of variations in the energy of non-bonded interactions as a function of varying chain length (in native structural format) facilitates the identification of protein structural domains. Plots display ‘troughs’ and ‘swells’. Locations within individual troughs that mark the largest sustained departure in slope correspond to domain boundaries.

 

Keywords: Protein domains; Protein folding; Non-bonded interactions.


MAIN

 

FULL-TEXT (SUBSCRIPTION OR PURCHASE ARTICLE)