©2023-2035 All Rights Reserved. Online
Journal of Bioinformatics . You may not store
these pages in any form except for your own personal use. All other usage or
distribution is illegal under international copyright treaties. Permission to
use any of these pages in any other way besides the
before mentioned
must be gained in writing from the publisher. This article is exclusively
copyrighted in its entirety to OJB.This article may be copied once
but may not be, reproduced or re-transmitted without the express permission of
the editors. This journal satisfies the refereeing
requirements (DEST) for the Higher Education Research Data Collection
(Australia). Linking:To link to this
page or any pages linking to this page you must link directly to this page only
here rather than put up your own page.
OJBTM
Online Journal of
Bioinformatics ©
(Including
Medical and Laboratory Research)
Established 1995
ISSN 1443-2250
Volume 24
(3):172-181, 2023
Insect binding fork head
protein transcription to DNA by base cooperation.
Mach V.
Institute
of Entomology, Czech Academy of Sciences, České Budějovice, Czech Republic.
ABSTRACT
Mach V., Insect binding fork head protein transcription to DNA by base
cooperation, Onl J Bioinform,
24 (3) 172-181, 2023.
DNA recognition by insect
Fork head transcription factors depends on specific combinations of neighboring
base cooperation. Author describes an algorithm to measure observed versus
expected frequencies of various base combinations within aligned binding sites for
in silico base cooperation. Statistically significant differences
between observed and expected frequencies can be interpreted as evidence of positive
or negative base cooperation. Our results suggest that base cooperation affects
DNA binding of vertebrate members of fork head family similar to insect
homologs.
Key words: base cooperation, non-independent bases, nucleotide combinations,
DNA binding, fork head.
FULL-TEXT (SUBSCRIBE OR PURCHASE TITLE)