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Journal of Bioinformatics©
Onl J Bioinform©
Established 1995
ISSN 1443-2250
Volume 27 (2) : 99-111,
2026.
DNA base binding of fork head protein.
Mach V.
Institute of Entomology, Czech Academy of Sciences, České Budějovice, Czech
Republic.
ABSTRACT
Mach V., DNA base binding of fork head protein.,
Onl J Bioinform., 27 (2) : 99-111,
2026. Recognition of DNA by insect
Fork head transcription depends on neighboring bases. This study describes
algorithm for in silico observed and expected frequencies of base sets
for aligned binding sites. Significant differences between observed and
expected frequencies are interpreted positive or negative base cooperation
effect. Our current results suggest that base cooperation affects DNA binding
of vertebrates with Fork head family such asr
insect homologs.
Key words: base
cooperation, non-independence of bases, nucleotide combinations, DNA binding,
Fork head
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